PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0089s0024.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 217aa    MW: 23039.6 Da    PI: 8.1671
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0089s0024.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.000547496123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         +kC+ C+k F +   L  H+ +H
  Kaladp0089s0024.1.p 74 HKCSVCNKAFGSYQALGGHMASH 96
                         79******************998 PP

2zf-C2H214.78.6e-05134156123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C+ksF++   L  H r+H
  Kaladp0089s0024.1.p 134 HECSICHKSFPTGQALGGHKRRH 156
                          78*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.9E-47297IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.24E-77396No hitNo description
PfamPF139127.8E-137498IPR007087Zinc finger, C2H2
PROSITE profilePS501579.43274101IPR007087Zinc finger, C2H2
SMARTSM003550.00497496IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
SuperFamilySSF576671.24E-7129156No hitNo description
PfamPF139122.7E-13134158IPR007087Zinc finger, C2H2
SMARTSM003550.039134156IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.473134156IPR007087Zinc finger, C2H2
PROSITE patternPS000280136156IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MALEALNSPA AFARFQESND HSWSAGDKRS RLVDQAGCST EEEHLALCLI SLAQGGPNKK  60
MRPSPVSSDP SAPHKCSVCN KAFGSYQALG GHMASHKRAA AVAAATAENY KDDHSKKQLH  120
SNKPASSVKA TADHECSICH KSFPTGQALG GHKRRHYEGI LGNHNSVKST STTPASIYEG  180
VQSRKNFDLN IPMPDGVVED EVSSGQQIQF GISTTP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013461770.12e-44C2H2-type zinc finger protein
TrEMBLB7FI302e-44B7FI30_MEDTR; C2H2-type zinc finger protein
TrEMBLI3S8462e-44I3S846_MEDTR; Uncharacterized protein
STRINGPOPTR_0014s01760.14e-39(Populus trichocarpa)
STRINGGLYMA04G04760.14e-39(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.12e-32salt tolerance zinc finger